Haplotype block analysis of an Argentinean hexaploid wheat collection and GWAS for yield components and adaptation

BMC Plant Biology, volume 19, Article number: 553, 2019

Silvana Marisol Luján Basile, Ignacio Abel Ramírez, Juan Manuel Crescente, Maria Belén Conde, Melina Demichelis, Pablo Abbate, John Rogers, Ana Clara Pontaroli, Marcelo Helguera, Leonardo Sebastián Vanzetti,

Abstract

Increasing wheat (Triticum aestivum L.) production is required to feed a growing human population. In order to accomplish this task a deeper understanding of the genetic structure of cultivated wheats and the detection of genomic regions significantly associated with the regulation of important agronomic traits are necessary steps. To better understand the genetic basis and relationships of adaptation and yield related traits, we used a collection of 102 Argentinean hexaploid wheat cultivars genotyped with the 35k SNPs array, grown from two to six years in three different locations. Based on SNPs data and gene-related molecular markers, we performed a haplotype block characterization of the germplasm and a genome-wide association study (GWAS).

 



DOI: https://doi.org/10.1186/s12870-019-2015-4